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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24917042_24919383_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24917042 - 24919383
Intron Length:
2342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCATA
5'SS Class:
major
3'SS Sequence:
GTTTTCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GATGTTTTCACT
Flanking Amino Acid:
FSLGDAEDIEGECSDSAFHV
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
72.5
38.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.9
0.61
0.8
71.6
34.2
Minor 5ss
49.1
-0.1
2.5
66.4
44.7
Minor BPS
50.2
0.09
1.8
68.82
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580