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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24917042_24919518_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24917042 - 24919518
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GATGTTTTCACT
Flanking Amino Acid:
TSPRRGRRKSGECSDSAFHV
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.9
0.61
0.8
71.6
34.2
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
50.2
0.09
1.8
68.82
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023301
24880600 - 24928030
47431