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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24919429_24919518_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24919429 - 24919518
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTAAGT
Flanking Amino Acid:
TSPRRGRRKSDLLEEFSLGD
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
57
0.3
2.1
80.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042442
24879758 - 24928030
48273
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000043135
24880600 - 24933179
52580