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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24926354_24927919_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24926354 - 24927919
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTTCAAAT
Flanking Amino Acid:
EEEELDFTPKKPQKPNLTLL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.7
88.4
27.5
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
65
0.55
1.6
81.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023301
24880600 - 24928030
47431
ENSAPLT00000022133
24880600 - 24930625
50026
ENSAPLT00000004959
24880600 - 24930625
50026
ENSAPLT00000042442
24879758 - 24928030
48273