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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24926354_24932984_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24926354 - 24932984
Intron Length:
6631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTTCAAAT
Flanking Amino Acid:
RWVHLLWTEEKPQKPNLTLL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.7
88.4
27.5
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
65
0.55
1.6
81.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043135
24880600 - 24933179
52580