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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_24927990_24928072_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24927990 - 24928072
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTAAGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGCTTTTTAAGA
Flanking Amino Acid:
IDDFSQGDSISSEKEGNDDS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
61.9
0.27
1.2
65.1
39.4
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
60.2
0.32
1.6
66.82
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004753
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004959
24880600 - 24930625
50026