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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25008798_25009234_F

Intron Information:

Intron Rank:
142527
Intron Class:
major
Intron Phase:
Intron Coordinates:
25008798 - 25009234
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTACATTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
49.5
-0
2
65.15
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026802
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027583
25008725 - 25029545
20821