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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25080049_25083657_F

Intron Information:

Intron Rank:
139533
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
25080049 - 25083657
Intron Length:
3609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTTT
5'SS Class:
weak_major
3'SS Sequence:
CGATTTTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
CGATTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73.3
38.2
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
77.2
0.61
0.9
71.7
38
Minor 5ss
70.8
0.7
2.2
82.3
37.4
Minor BPS
50.6
0.01
1.7
59.83
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025022
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048401
25079669 - 25092774
13106
ENSAPLT00000022060
25079669 - 25090216
10548