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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25092541_25097077_R

Intron Information:

Intron Rank:
136775
Intron Class:
major
Intron Phase:
Intron Coordinates:
25092541 - 25097077
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.8
0.74
0.8
80.1
31.7
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
67.9
0.56
1.7
81.76
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021071
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043553
25091733 - 25108483
16751