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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2511260_2513120_R

Intron Information:

Intron Rank:
150167
Intron Class:
major
Intron Phase:
Intron Coordinates:
2511260 - 2513120
Intron Length:
1861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTCTATTGACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
66.7
38.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
45.9
-0.4
2.6
56.9
42.2
Minor BPS
53.2
-0
1.7
61.95
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026287
2510952 - 2552883
41932