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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2513285_2514942_R

Intron Information:

Intron Rank:
150168
Intron Class:
major
Intron Phase:
Intron Coordinates:
2513285 - 2514942
Intron Length:
1658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.3
30.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
33.6
-1.9
2.8
31.7
42.6
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026287
2510952 - 2552883
41932