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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25136764_25147922_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25136764 - 25147922
Intron Length:
11159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACGGGC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTTCTTACAG
Flanking Amino Acid:
ARDDSAAAAAKREFDVDNLS
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
55.7
43.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
35.6
-1.6
3.6
50
46.7
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778