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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2515318_2552837_R

Intron Information:

Intron Rank:
150169
Intron Class:
major
Intron Phase:
Intron Coordinates:
2515318 - 2552837
Intron Length:
37520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTAGTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
51.3
0.12
2
77.31
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026287
2510952 - 2552883
41932