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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25177032_25182983_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25177032 - 25182983
Intron Length:
5952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
CTTTAACTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTGCTTTAACT
Flanking Amino Acid:
DSDSLLVTASGWSSSLTPLL
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
0.9
69.3
35.6
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
78.2
0.96
1.3
88.47
36.7

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778
ENSAPLT00000046269
25136170 - 25222947
86778