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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25183188_25188533_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25183188 - 25188533
Intron Length:
5346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCAATTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTATTCTCAATT
Flanking Amino Acid:
LYSAATNGHTDCVRLLLTAE
Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.5
0.58
0.8
69.2
35.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
70.9
0.73
1.4
84.82
35.6

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778