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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25196654_25199064_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25196654 - 25199064
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
DDCKHLLENLNALNVPVRIS
Intron Amino Acid Position:
1140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778