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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25200425_25200836_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25200425 - 25200836
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTTTC
5'SS Class:
major
3'SS Sequence:
CTCTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TCTTTTTTAAAG
Flanking Amino Acid:
RAEHITVFLFGPQEGCLNSV
Intron Amino Acid Position:
1264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.8
32.6
Major BPS
70
0.5
1
67
39.8
Major PPT
79.5
0.66
1
81.2
28.2
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
66.4
0.38
1.4
67.62
40.4

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778