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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25202348_25207413_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25202348 - 25207413
Intron Length:
5066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTGTAAGT
Flanking Amino Acid:
EQLAELFISSACLVPVKQPP
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
75.4
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
47.9
-0.2
2.8
65.3
45.9
Minor BPS
51.3
0.12
2.2
77.06
40.2

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778
ENSAPLT00000046269
25136170 - 25222947
86778