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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25208028_25210909_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25208028 - 25210909
Intron Length:
2882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
AGGTCTTGCATT
Flanking Amino Acid:
RFLRRKVINKFRGKVPPPCD
Intron Amino Acid Position:
1467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
47.4
-0.1
1.9
63.59
41.2

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778