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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25211089_25214756_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25211089 - 25214756
Intron Length:
3668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCACCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTTCTCTGAGG
Flanking Amino Acid:
VVPGHGQATVKWMSKLWNAV
Intron Amino Acid Position:
1526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
71.2
0.48
0.9
62.6
38.8
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
51.7
-0
2
67.05
41.1

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010899
25136170 - 25222947
86778
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778