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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25214963_25215132_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25214963 - 25215132
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCTTTCTAACA
Flanking Amino Acid:
VLHGCPLPRTELDNYIADFK
Intron Amino Acid Position:
1595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
63.8
0.43
1.6
75.11
36.7

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778
ENSAPLT00000046269
25136170 - 25222947
86778