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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25218501_25220579_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25218501 - 25220579
Intron Length:
2079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
TTATCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATTTCTTATCA
Flanking Amino Acid:
SSKSEPDISKIADSKDALLM
Intron Amino Acid Position:
1722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
80.2
0.68
0.8
78.4
34.8
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
67.7
0.55
1.5
74.71
36.5

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010899
25136170 - 25222947
86778
ENSAPLT00000046269
25136170 - 25222947
86778
ENSAPLT00000027692
25136170 - 25222947
86778