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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25220682_25222583_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25220682 - 25222583
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTTATT
Flanking Amino Acid:
TNPSKTTKQKDGTRPLSSSR
Intron Amino Acid Position:
1756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.7
80
30.8
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
68.8
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027692
25136170 - 25222947
86778
ENSAPLT00000010899
25136170 - 25222947
86778