About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25221806_25222583_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25221806 - 25222583
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACTCC
5'SS Class:
major
3'SS Sequence:
CTTTTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCTTTTATT
Flanking Amino Acid:
CLTVVNCILEDGTRPLSSSR
Intron Amino Acid Position:
1780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.2
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.7
80
30.8
Minor 5ss
43.4
-0.7
3.1
60.1
44.6
Minor BPS
68.8
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
CTTNBP2
Ensembl Gene ID:
ENSAPLG00000010400
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046269
25136170 - 25222947
86778