Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25231656_25233119_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25231656 - 25233119

Intron Length:

1464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGCATT

5'SS Class:

strong_major

3'SS Sequence:

AATGTTTCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAT

U12 Branch Point Sequence:

ATCCACCTAATA

Flanking Amino Acid:

EAILECQRFLVIEDNKMKQY

Intron Amino Acid Position:

1418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

0.9

79.6

35.4

Major BPS

73.1

0.57

71.9

31.3

Major PPT

0.63

0.9

74.4

40.5

Minor 5ss

-1.1

3.1

54.5

43.9

Minor BPS

48.7

-0.1

1.8

61.23

38.5

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047941

25230623 - 25314702

84080

ENSAPLT00000011736

25230460 - 25314702

84243