Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25234468_25237505_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25234468 - 25237505

Intron Length:

3038

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTCAC

U12 Branch Point Sequence:

TGTACCTCACTG

Flanking Amino Acid:

DEEIWKVAEEVGLKSVIEQF

Intron Amino Acid Position:

1325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

67.7

37.5

Major BPS

63.6

0.34

65.3

32.1

Major PPT

76.3

0.59

0.9

73.5

31.5

Minor 5ss

31.6

-2.1

3.1

40.3

45.3

Minor BPS

48.4

-0.2

1.9

57.29

44.2

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047941

25230623 - 25314702

84080

ENSAPLT00000011736

25230460 - 25314702

84243