Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25245015_25247080_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25245015 - 25247080

Intron Length:

2066

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGCAC

5'SS Class:

major

3'SS Sequence:

ATTTGCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CTTTTATGAATT

Flanking Amino Acid:

ISFTISSGQTVGLLGRTGSG

Intron Amino Acid Position:

1243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

60.4

40.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

78.1

0.63

0.9

Minor 5ss

26.1

-2.7

3.1

33.6

41.9

Minor BPS

58.1

0.33

1.7

77.48

39.2

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047941

25230623 - 25314702

84080

ENSAPLT00000011736

25230460 - 25314702

84243