Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25247324_25255326_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25247324 - 25255326

Intron Length:

8003

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGATTCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTGTTTTGATT

Flanking Amino Acid:

VNSSIDVDSLMRSVSRIFKF

Intron Amino Acid Position:

1162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

79.8

35.3

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

77.6

0.62

0.8

70.3

40.3

Minor 5ss

43.1

-0.8

2.9

54.5

43.9

Minor BPS

66.4

0.6

1.3

81.5

34.7

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047941

25230623 - 25314702

84080

ENSAPLT00000011736

25230460 - 25314702

84243