Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25264819_25265634_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25264819 - 25265634

Intron Length:

816

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTAGG

5'SS Class:

strong_major

3'SS Sequence:

TCTTAATTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTCTTAATT

Flanking Amino Acid:

PMSAFNSLKAGSILNRFSKD

Intron Amino Acid Position:

975

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

1.1

72.7

44.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

74.7

0.55

0.8

69.2

35.7

Minor 5ss

40.7

-1

2.6

51.6

44.9

Minor BPS

90.1

1.34

0.7

99.4

21.6

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011736

25230460 - 25314702

84243

ENSAPLT00000047941

25230623 - 25314702

84080