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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25284496_25286485_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25284496 - 25286485
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
ATATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TAACCATTAATA
Flanking Amino Acid:
AVSGSTGAGKTSLLMLIMGE
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
87.1
0.83
0.8
85.3
34.4
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
61.6
0.36
1.6
68.8
36.7

Associated Gene:

Gene:
CFTR
Ensembl Gene ID:
ENSAPLG00000011156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011736
25230460 - 25314702
84243
ENSAPLT00000047941
25230623 - 25314702
84080