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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25293334_25293842_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25293334 - 25293842
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGAGA
5'SS Class:
major
3'SS Sequence:
TTTTACTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTTATA
Flanking Amino Acid:
AWLGQRMMKYRDKRAGKINE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
67.6
39
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.8
0.7
80.9
30.8
Minor 5ss
26.3
-2.7
2.9
31.4
42.3
Minor BPS
66.2
0.5
1.8
80.4
35

Associated Gene:

Gene:
CFTR
Ensembl Gene ID:
ENSAPLG00000011156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011736
25230460 - 25314702
84243
ENSAPLT00000047941
25230623 - 25314702
84080