Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25296804_25302788_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25296804 - 25302788

Intron Length:

5985

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCATCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATTAT

U12 Branch Point Sequence:

CTGACCAAAATT

Flanking Amino Acid:

MFYGILLYLGEVTKSVQPLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

81.6

33.2

Major BPS

68.1

0.45

58.1

38.5

Major PPT

84.6

0.78

0.7

81.9

28.7

Minor 5ss

43.4

-0.7

3.2

57.2

46.9

Minor BPS

47.2

-0.1

65.19

45.6

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047941

25230623 - 25314702

84080

ENSAPLT00000011736

25230460 - 25314702

84243