Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25302901_25304212_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25302901 - 25304212

Intron Length:

1312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAAAT

5'SS Class:

strong_major

3'SS Sequence:

GGTTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

CACAACTTAATG

Flanking Amino Acid:

SADNLSEKLEREWDRELATS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

82.4

29.8

Major BPS

78.2

0.7

77.9

32.1

Major PPT

84.1

0.77

0.8

36.6

Minor 5ss

41.2

-1

2.9

57.1

47.2

Minor BPS

49.8

-0.1

1.7

50.1

43.9

Associated Gene:

Gene:

CFTR

Ensembl Gene ID:

ENSAPLG00000011156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047941

25230623 - 25314702

84080

ENSAPLT00000011736

25230460 - 25314702

84243