Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25338926_25343776_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25338926 - 25343776

Intron Length:

4851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTAAA

5'SS Class:

strong_major

3'SS Sequence:

TAAATTTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

GTATCTTAAATT

Flanking Amino Acid:

VSLIEELLNSGVSIESSFQF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

85.1

25.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

69.4

0.44

1.1

45.1

Minor 5ss

35.1

-1.7

2.7

42.4

44.3

Minor BPS

63.6

0.51

1.6

77.22

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048158

25336481 - 25344589

8109