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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25375409_25378982_R

Intron Information:

Intron Rank:
147169
Intron Class:
major_hybrid
Intron Phase:
Intron Coordinates:
25375409 - 25378982
Intron Length:
3574

Sequence Information:

Terminal Dinucleotides:
GT-CG
5'SS Sequence:
CCA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTCTCATTTCTCG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1
65.5
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
44.4
-0.3
3.2
66.2
39.8
Minor 5ss
32.8
-2
2.7
40.5
39
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026489
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044335
25375205 - 25379897
4693