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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25383826_25386869_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25383826 - 25386869
Intron Length:
3044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTGTTTTACCT
Flanking Amino Acid:
NLHNNRAGRKAVKRFLKQEC
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
70.5
0.46
1
66.3
38.7
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
63.6
0.5
1.7
82.56
39.6

Associated Gene:

Gene:
WNT2
Ensembl Gene ID:
ENSAPLG00000003242
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003301
25380788 - 25387211
6424