About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25401545_25407196_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25401545 - 25407196
Intron Length:
5652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGATTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGACCTGAACG
Flanking Amino Acid:
PELMGVFAKAFLSTLFAPLN
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.6
0.8
0.8
80.8
36.6
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
65.8
0.36
1.6
69.42
43.4

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000034889
25401449 - 25536409
134961
ENSAPLT00000028075
25401449 - 25466930
65482