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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25407337_25410295_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25407337 - 25410295
Intron Length:
2959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACGTTGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTCAAT
Flanking Amino Acid:
TETADRELLPSFHEVSVYPK
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66.3
40.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
92.1
0.95
0.6
87.6
22.7
Minor 5ss
41.9
-0.9
3.1
56.4
41.6
Minor BPS
51
0.11
2.2
79.62
41.7

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000034889
25401449 - 25536409
134961