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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25410389_25416474_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25410389 - 25416474
Intron Length:
6086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CTCACGGTAATT
Flanking Amino Acid:
LNLLHCTWEGTFRMIPYPLE
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
43.5
-0.4
2.6
63.64
47.2

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034889
25401449 - 25536409
134961
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000035573
25401393 - 25466930
65538