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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25426780_25428387_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25426780 - 25428387
Intron Length:
1608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CATTTCTGACCT
Flanking Amino Acid:
ALLKARAVSDKFSPEAASRR
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
55.6
0.26
1.8
73.44
43.4

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028075
25401449 - 25466930
65482
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000035573
25401393 - 25466930
65538
ENSAPLT00000034889
25401449 - 25536409
134961