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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25447581_25450890_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25447581 - 25450890
Intron Length:
3310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TACTTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTCTCTTTACTT
Flanking Amino Acid:
HHGAQYEAQHRRDTNVLVYI
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.4
0.71
0.9
77.3
35.7
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
63.1
0.49
1.6
75.88
41.7

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028075
25401449 - 25466930
65482
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000035573
25401393 - 25466930
65538
ENSAPLT00000034889
25401449 - 25536409
134961