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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25452419_25453585_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25452419 - 25453585
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
GTTTGTTGAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTTTGTTGAATA
Flanking Amino Acid:
DTDHLRPADAIMQKAWRERN
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
70.6
33.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
65.6
0.35
1.1
62.2
43.3
Minor 5ss
34
-1.8
3.5
48.9
42.5
Minor BPS
54.5
0.14
1.9
68.66
38.1

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000035573
25401393 - 25466930
65538
ENSAPLT00000034889
25401449 - 25536409
134961
ENSAPLT00000028075
25401449 - 25466930
65482