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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25453702_25454247_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25453702 - 25454247
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GACATGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
ATTAACCAAACT
Flanking Amino Acid:
LNLFRGAEYNRYTWVTGREP
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
69.3
0.43
1
61.2
44.2
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
47.5
-0.1
2.2
73.35
42.8

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028075
25401449 - 25466930
65482
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000035573
25401393 - 25466930
65538
ENSAPLT00000034889
25401449 - 25536409
134961