About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25458632_25466561_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25458632 - 25466561
Intron Length:
7930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GGCTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GTGCCAGTGACG
Flanking Amino Acid:
TSSLISGLILIFEWWYFRKY
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
68.7
0.42
1.1
60.8
44.7
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
42.9
-0.7
2.3
50.13
43.7

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028075
25401449 - 25466930
65482
ENSAPLT00000024222
25401449 - 25540897
139449
ENSAPLT00000039925
25401449 - 25466930
65482
ENSAPLT00000010858
25401449 - 25503482
102034
ENSAPLT00000035573
25401393 - 25466930
65538
ENSAPLT00000034889
25401449 - 25536409
134961