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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25466645_25503460_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25466645 - 25503460
Intron Length:
36816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
MFGTESSLSMFLNTLTP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010858
25401449 - 25503482
102034