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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25466645_25536159_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25466645 - 25536159
Intron Length:
69515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
73.7
32.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
27.9
-2.5
3
30.1
36.3
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034889
25401449 - 25536409
134961