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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25466645_25540746_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25466645 - 25540746
Intron Length:
74102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
PLKINDNLTTVSMFLNTLTP
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
54.3
44.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
35.5
-1.6
3.4
48.8
46.9
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
ST7
Ensembl Gene ID:
ENSAPLG00000010396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024222
25401449 - 25540897
139449