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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25553970_25554805_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25553970 - 25554805
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTGTATGACT
Flanking Amino Acid:
IVEAAENEYQTAISENYQTM
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.7
0.58
1.1
72.2
42.7
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
57
0.3
2.1
83.92
37.2

Associated Gene:

Gene:
CAPZA2
Ensembl Gene ID:
ENSAPLG00000021156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046835
25553754 - 25582551
28798