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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25554869_25557337_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25554869 - 25557337
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCAGACCTAATT
Flanking Amino Acid:
KDIQDSLTVSNEAQTAKEFI
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
34.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
87.5
0.84
0.6
81.5
30.5
Minor 5ss
34.9
-1.7
3.3
49.9
46.4
Minor BPS
48.2
-0
1.9
66.37
44.3

Associated Gene:

Gene:
CAPZA2
Ensembl Gene ID:
ENSAPLG00000021156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046835
25553754 - 25582551
28798