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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25557410_25560949_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25557410 - 25560949
Intron Length:
3540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
TQVAGILKIQVHYYEDGNVQ
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.7
0.64
0.8
74.4
35.9
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
CAPZA2
Ensembl Gene ID:
ENSAPLG00000021156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046835
25553754 - 25582551
28798